I saw Dark Knight Rises in both real IMAX and Liemax, and while the latter wasn't as good of an experience, I wouldn't say that it wasn't what the filmmakers intended. The same can be said for both DKR and MI4 -- just because there are multiple versions with varying heights doesn't inherently mean that one is preferred over the others simply because image was added or subtracted. In fact, Brad Bird didn't want the IMAX version released on Blu-ray because it wouldn't replicate the real experience, which I happen to disagree with.
Ultimately, it comes down to whether or not you believe they intended to have the two formats while shooting. Unless Deakins/Mendes say so explicitly, we can't know for sure.